Spinal Muscular Atrophy (SMA)
GeneSMN1
InheritanceAutosomal recessive
OMIM253300
Incidence~1 in 10,000 live births
Carrier frequency~1 in 40-50
US patients~10,000-25,000 living
Global patientshundreds of thousands
NotesHistorically the leading genetic cause of infant mortality.
Mechanism
AAV9 delivery of a functional SMN1 gene copy (SMN2 copy number modifies severity).
Biomarker / genetic test
Homozygous SMN1 exon 7 deletion/mutation; SMN2 copy number for prognosis.
SMN1 deletion testing (MLPA/qPCR); included in newborn screening in most US states and a growing number of countries.
Approved gene / cell-gene therapies
Zolgensma (onasemnogene abeparvovec)AAV9-SMN1, one-time IV
Sponsor: Novartis · Approved: US 2019; EU 2020; Japan 2020
List price: ~2,100,000 (one-time)
Eligibility: Typically <2 years; weight-based dosing
Other treatments: Nusinersen (Spinraza, antisense, intrathecal) and risdiplam (Evrysdi, oral) are non-gene-therapy disease-modifying drugs.
RPE65-mediated inherited retinal dystrophy (Leber congenital amaurosis type 2 / retinitis pigmentosa)
GeneRPE65
InheritanceAutosomal recessive
OMIM204100
IncidenceRPE65 disease affects ~1 in 200,000
US patients~1,000-3,000
Global patientstens of thousands
NotesFirst FDA-approved directly administered gene therapy for an inherited disease.
Mechanism
Subretinal AAV2 delivery of RPE65 to retinal pigment epithelium.
Biomarker / genetic test
Biallelic RPE65 pathogenic variants with viable retinal cells.
Inherited retinal disease gene panel / confirmatory RPE65 sequencing; requires documented biallelic variants.
Approved gene / cell-gene therapies
Luxturna (voretigene neparvovec)AAV2-RPE65, subretinal, per-eye
Sponsor: Spark Therapeutics (Roche) · Approved: US 2017; EU 2018
List price: ~425,000 per eye (~850,000 bilateral)
Eligibility: Confirmed biallelic RPE65, viable retinal cells
Sickle Cell Disease (SCD)
GeneHBB
InheritanceAutosomal recessive
OMIM603903
Incidence~1 in 365 US Black newborns; ~300,000+ affected births/year globally
US patients~100,000
Global patients~7-8 million
NotesMajor global burden concentrated in sub-Saharan Africa and India.
Mechanism
Autologous CD34+ HSC editing — CRISPR of BCL11A enhancer to raise fetal hemoglobin (Casgevy), or lentiviral anti-sickling β-globin (Lyfgenia).
Biomarker / genetic test
Homozygous HbS (βS/βS) or compound heterozygous genotypes; hemoglobin electrophoresis.
Hemoglobin electrophoresis / HBB sequencing; newborn screening universal in the US.
Approved gene / cell-gene therapies
Casgevy (exagamglogene autotemcel, exa-cel)CRISPR-edited autologous HSCs (ex vivo)
Sponsor: Vertex / CRISPR Therapeutics · Approved: US 2023; UK/EU 2023-2024
List price: ~2,200,000
Eligibility: Age ≥12 with recurrent vaso-occlusive crises
Lyfgenia (lovotibeglogene autotemcel)Lentiviral β-globin gene addition (ex vivo)
Sponsor: bluebird bio · Approved: US 2023
List price: ~3,100,000
Eligibility: Age ≥12 with vaso-occlusive events
Management / repurposing candidates
Sirolimus —
Tacrolimus Anhydrous —
Abatacept —
Acalabrutinib —
Acalabrutinib Maleate —
Acebutolol —
Acebutolol Hydrochloride —
Aceclidine —
Transfusion-dependent β-thalassemia
GeneHBB
InheritanceAutosomal recessive
OMIM613985
Incidence~1 in 100,000 globally (much higher in Mediterranean, Middle East, South/SE Asia)
US patients~1,000 transfusion-dependent
Global patients~hundreds of thousands transfusion-dependent
NotesCarrier frequency very high in endemic regions.
Mechanism
Autologous HSC gene addition of functional β-globin (Zynteglo) or BCL11A editing to raise HbF (Casgevy).
Biomarker / genetic test
HBB pathogenic variants with transfusion dependence.
HBB sequencing; hemoglobin studies; transfusion history.
Approved gene / cell-gene therapies
Zynteglo (betibeglogene autotemcel)Lentiviral β-globin gene addition (ex vivo)
Sponsor: bluebird bio · Approved: US 2022; (EU approval later withdrawn commercially)
List price: ~2,800,000
Eligibility: Transfusion-dependent, all genotypes
Casgevy (exa-cel)CRISPR-edited autologous HSCs (ex vivo)
Sponsor: Vertex / CRISPR Therapeutics · Approved: US/UK/EU 2023-2024
List price: ~2,200,000
Eligibility: Age ≥12, transfusion-dependent
Management / repurposing candidates
Sirolimus —
Acetazolamide —
Amitriptyline Hydrochloride —
Amphetamine —
Bicalutamide —
Carbachol —
Ciprofloxacin —
Cladribine —
Hemophilia B (Factor IX deficiency)
GeneF9
InheritanceX-linked recessive
OMIM306900
Incidence~1 in 30,000 male births
US patients~5,000-7,000
Global patients~35,000-40,000 (diagnosed)
NotesAbout 1/4 as common as hemophilia A.
Mechanism
AAV-delivered F9 (often the hyperactive Padua variant) to hepatocytes for endogenous Factor IX.
Biomarker / genetic test
Low Factor IX activity; F9 pathogenic variant.
Factor IX activity assay + F9 sequencing; AAV neutralizing-antibody screen for eligibility.
Approved gene / cell-gene therapies
Hemgenix (etranacogene dezaparvovec)AAV5-F9 Padua, one-time IV
Sponsor: CSL Behring / uniQure · Approved: US 2022; EU 2023
List price: ~3,500,000 (one-time)
Eligibility: Adults, low AAV5 neutralizing antibodies
Management / repurposing candidates
Abciximab —
Acetazolamide —
Adalimumab —
Albutrepenonacog Alfa —
Alteplase —
Amphetamine —
Andexanet Alfa —
Anifrolumab —
Hemophilia A (Factor VIII deficiency)
GeneF8
InheritanceX-linked recessive
OMIM306700
Incidence~1 in 5,000 male births
US patients~20,000-25,000
Global patients~150,000+ (diagnosed)
NotesMost common severe inherited bleeding disorder.
Mechanism
AAV-delivered B-domain-deleted F8 to hepatocytes for endogenous Factor VIII.
Biomarker / genetic test
Low Factor VIII activity; F8 pathogenic variant.
Factor VIII activity assay + F8 sequencing; AAV5 neutralizing-antibody screen.
Approved gene / cell-gene therapies
Roctavian (valoctocogene roxaparvovec)AAV5-F8 (BDD), one-time IV
Sponsor: BioMarin · Approved: US 2023; EU 2022
List price: ~2,900,000 (one-time)
Eligibility: Adults with severe HemA, low AAV5 antibodies
Management / repurposing candidates
Abciximab —
Acetazolamide —
Adalimumab —
Albutrepenonacog Alfa —
Alteplase —
Amphetamine —
Andexanet Alfa —
Anifrolumab —
Duchenne Muscular Dystrophy (DMD)
GeneDMD (dystrophin)
InheritanceX-linked recessive
OMIM310200
Incidence~1 in 3,500-5,000 male births
US patients~10,000-15,000
Global patients~300,000 males
NotesMicro-dystrophin restores a partial protein, not full-length dystrophin.
Mechanism
AAV delivery of a shortened engineered 'micro-dystrophin' gene to muscle.
Biomarker / genetic test
DMD pathogenic variant; absent/near-absent dystrophin.
DMD deletion/duplication (MLPA) + sequencing; needed to confirm mutation type/amenability.
Approved gene / cell-gene therapies
Elevidys (delandistrogene moxeparvovec)AAVrh74 micro-dystrophin, one-time IV
Sponsor: Sarepta / Roche · Approved: US 2023 (accelerated; label later expanded)
List price: ~3,200,000 (one-time)
Eligibility: Ambulatory/non-ambulatory per evolving label; confirmed DMD mutation
Other treatments: Exon-skipping antisense drugs (eteplirsen, golodirsen, viltolarsen, casimersen) are mutation-specific, non-gene-therapy options.
Metachromatic Leukodystrophy (MLD)
GeneARSA
InheritanceAutosomal recessive
OMIM250100
Incidence~1 in 40,000-160,000
US patients~low thousands
Global patientstens of thousands
NotesBenefit depends on treating before major neurologic decline.
Mechanism
Ex vivo lentiviral ARSA gene addition to autologous HSCs (pre-symptomatic/early).
Biomarker / genetic test
Low arylsulfatase A activity; ARSA variants; elevated urinary sulfatides.
ARSA enzyme activity + gene sequencing; early/pre-symptomatic detection is critical.
Approved gene / cell-gene therapies
Lenmeldy (atidarsagene autotemcel) / Libmeldy (EU)Lentiviral ARSA autologous HSCs (ex vivo)
Sponsor: Orchard Therapeutics · Approved: EU 2020 (Libmeldy); US 2024 (Lenmeldy)
List price: ~4,250,000 (among the highest listed)
Eligibility: Pre-/early-symptomatic late-infantile or early-juvenile
Cerebral Adrenoleukodystrophy (CALD)
GeneABCD1
InheritanceX-linked recessive
OMIM300100
IncidenceX-ALD ~1 in 15,000-17,000 (all forms); a subset develop cerebral form
US patients~thousands (X-ALD overall)
Global patientstens of thousands (X-ALD overall)
NotesSkysona carries a boxed warning for hematologic malignancy risk.
Mechanism
Ex vivo lentiviral ABCD1 gene addition to autologous HSCs.
Biomarker / genetic test
Elevated very-long-chain fatty acids (VLCFA); ABCD1 variant; MRI lesion (Loes score).
Plasma VLCFA + ABCD1 sequencing; MRI surveillance for cerebral progression.
Approved gene / cell-gene therapies
Skysona (elivaldogene autotemcel)Lentiviral ABCD1 autologous HSCs (ex vivo)
Sponsor: bluebird bio · Approved: US 2022; EU 2021
List price: ~3,000,000
Eligibility: Early active CALD, boys 4-17, when no matched donor
Aromatic L-amino Acid Decarboxylase (AADC) Deficiency
GeneDDC
InheritanceAutosomal recessive
OMIM608643
IncidenceUltra-rare; hundreds reported worldwide (higher in Taiwan/Japan)
US patients<100 known
Global patientshundreds
NotesFirst approved gene therapy delivered directly into the brain.
Mechanism
Stereotactic AAV2-hAADC delivered directly to the putamen.
Biomarker / genetic test
Low AADC activity; DDC variants; low CSF neurotransmitter metabolites.
DDC sequencing + CSF neurotransmitter metabolites + plasma AADC activity.
Approved gene / cell-gene therapies
Kebilidi (eladocagene exuparvovec) / Upstaza (EU)AAV2-hAADC, intraputaminal
Sponsor: PTC Therapeutics · Approved: EU 2022 (Upstaza); US 2024 (Kebilidi)
List price: ~3,000,000 (region-dependent)
Eligibility: Confirmed AADC deficiency, ≥18 months
ADA-SCID (severe combined immunodeficiency due to adenosine deaminase deficiency)
GeneADA
InheritanceAutosomal recessive
OMIM102700
IncidenceADA-SCID ~1 in 200,000-1,000,000
US patients<100 (very rare)
Global patientshundreds
NotesStrimvelis is delivered at a single center in Milan, Italy.
Mechanism
Ex vivo gammaretroviral/lentiviral ADA gene addition to autologous HSCs.
Biomarker / genetic test
Absent ADA enzyme activity; ADA variants; very low T/B/NK cells.
ADA enzyme activity + gene sequencing; SCID picked up on TREC newborn screening.
Approved gene / cell-gene therapies
StrimvelisGammaretroviral ADA autologous CD34+ cells (ex vivo)
Sponsor: Orchard Therapeutics · Approved: EU 2016
List price: ~700,000 (EU, single-center)
Eligibility: ADA-SCID with no matched related donor
Other treatments: Enzyme replacement (PEG-ADA) and allogeneic HSCT are alternatives.
Lipoprotein Lipase Deficiency (LPLD)
GeneLPL
InheritanceAutosomal recessive
OMIM238600
Incidence~1 in 1,000,000
US patients<500
Global patients~thousands
NotesGlybera was the first gene therapy approved in the West (EU 2012) but was withdrawn commercially in 2017 — a landmark cautionary tale on ultra-rare pricing.
Mechanism
AAV1-LPL(S447X) intramuscular injection (historical).
Biomarker / genetic test
Severe hypertriglyceridemia; absent LPL activity; LPL variants.
LPL sequencing + post-heparin lipase activity.
Approved gene / cell-gene therapies
Glybera (alipogene tiparvovec) — WITHDRAWNAAV1-LPL(S447X), intramuscular
Sponsor: uniQure · Approved: EU 2012 (withdrawn 2017)
List price: ~1,000,000 (historical; treated ~1 commercial patient)
Eligibility: Historical
Cystic Fibrosis (CF)
GeneCFTR
InheritanceAutosomal recessive
OMIM219700
Incidence~1 in 2,500-3,500 in populations of European descent
US patients~40,000
Global patients~100,000+
NotesCFTR modulators (e.g., Trikafta) transformed care but do not help all genotypes — the gap gene therapy targets.
Mechanism
No gene therapy approved. Active inhaled gene/mRNA and editing programs aim to address mutations not covered by modulators.
Biomarker / genetic test
CFTR variants (e.g., F508del); sweat chloride; included in newborn screening.
CFTR variant panel / full-gene sequencing + sweat chloride test.
Approved gene / cell-gene therapies
Inhaled lentiviral, AAV, and LNP/mRNA CFTR programs are in clinical/preclinical development.
Other treatments: CFTR modulators (ivacaftor, lumacaftor, tezacaftor, elexacaftor/Trikafta) are approved small molecules, not gene therapy.
Management / repurposing candidates
Ciprofloxacin —
Acetazolamide —
Adalimumab —
Alclometasone —
Alclometasone Dipropionate —
Amcinonide —
Amphetamine —
Apigenin —
Leber Hereditary Optic Neuropathy (LHON)
GeneMT-ND4 (mitochondrial)
InheritanceMitochondrial (maternal)
OMIM535000
Incidence~1 in 30,000-50,000
US patients~thousands
Global patientstens of thousands
NotesLate-stage trials (e.g., lenadogene nolparvovec) reported bilateral improvement; regulatory status still evolving.
Mechanism
Intravitreal AAV2 allotopic expression of ND4 (investigational; not yet approved).
Biomarker / genetic test
Primary mtDNA variants (m.11778G>A most common).
Mitochondrial DNA testing for the three primary LHON variants.
Approved gene / cell-gene therapies
Lenadogene nolparvovec (GS010) and related AAV2-ND4 programs are in late-stage development; no full approval as of the AS_OF date.